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| CGHtest-package | Testing association of copy number with clinical variables |
| cghreg | CGHregions object |
| CGHtest | Testing association of copy number with clinical variables |
| datalung | Copy number data lung tumors |
| fdrperm | FDR correction |
| groupfreq | Group frequencies |
| pvalstest | Permutation p-values for copy number data |
| pvalstest_logrank | Permutation p-values for copy number data |
| survdat | Survival data lung cancer |