dnaCplusT

This site corresponds to the  paper:

Kyung In Kim, Etienne Roquain, Mark A. van de Wiel (2010) Spatial clustering of array CGH features in combination with hierarchical multiple testing.
Statist Appl Genom Mol Biol, 9, Article 40.

R software packages:

dnaCplusT_1.3.zip (for Unix/Linux: dnaCplusT_1.3.tar.gz). Updated 23/12/2010: includes additional plotting functionality.

The R/Bioconductor-packages CGHbase, CGHcall and CGHregions may be used for prerpocessing. These are available from Bioconductor.

Example script for using the dnaCplusT package.