This site corresponds to the  paper:

Kyung In Kim, Etienne Roquain, Mark A. van de Wiel (2010) Spatial clustering of array CGH features in combination with hierarchical multiple testing.
Statist Appl Genom Mol Biol, 9, Article 40.

R software packages:

(for Unix/Linux: dnaCplusT_1.3.tar.gz). Updated 5/12/2013: (rebuilt for > R 3.0.0)

The R/Bioconductor-packages CGHbase, CGHcall and CGHregions may be used for prerpocessing. These are available from Bioconductor.

Example script for using the dnaCplusT package.