Anton Feenstra Posters

This is a list of posters I made and presented, downloadable as PDF of 1-2Mb, older ones as JPEG images of about ½Mb in size.

	Multi-Harmony: detecting functional specificity from sequence alignment K. Anton Feenstra, Bernd Brandt, Jaap Heringa	A dynamic regulatory network model reveals hard-wired heterogeneity in blood stem cells Nicola Bonzanni^, Abhishek Garg^1, Diego Miranda-Saavedra², Anton Feenstra, Ioannis Xenarios³, Jaap Heringa, Bertie Göttgens² ^* Equal Contribution ¹ Ecole Polytechnique Federale de Lausanne, Switzerland ² University of Cambridge, Department of Haematology, MRC Centre, Cambridge, UK ³ Swiss Institute of Bioinformatics, Vital-IT Group, Lausanne, Switzerland
	ECCB (European Conference on Computational Biology), September 2010, Gent, Belgium

	Protein-Protein Interactions: Interface, Surface & Specificity (PPI:ISS) K. Anton Feenstra, Anita de Ruiter, Bas E. Dutilh¹, Vera van Noort¹, Giacomo Bastianelli², Martijn Huijnen¹ and Jaap Heringa ¹ NCMLS Nijmegen Centre for Molecular Life Sciences ² Institut Pasteur, Paris, France ISMB 2009 Stockholm	MultiRELIEF: specificity-determining residues from alignments by Machine Learning and Feature Weighting K. Anton Feenstra, Kai Ye¹, Jaap Heringa, Adriaan P. IJzerman¹, Elena Marchiori ¹ Med. Chem., LACDR, Leiden Univ., Leiden, NL Benelux Bioinformatics Conference, November 2007, Leuven, Belgium	Sequence Harmony: Detecting Functional Specificity from Alignments K. Anton Feenstra, Walter Pirovano and Jaap Heringa

	Sequence Comparison by Sequence Harmony: Web Server and Application to HIV Disease Progression K. Anton Feenstra, Walter Pirovano and Jaap Heringa 15th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Vienna, Austria, July 2007 Sequence Harmony HIV poster text	Sequence Comparison by Sequence Harmony Identifies Subtype-Specific Sites for Smad Receptor Binding Walter Pirovano, K. Anton Feenstra and Jaap Heringa ISMB2006, Fortaleza, Brazil Full-size SMAD Poster (372Kb)	CYP2D6 Inhibition - 3D-QSAR prediciton of IC50's and Influence of Compound Conformers from Docking K. Anton Feenstra, Chris Oostenbrink and Nico P.E. Vermeulen MGMS International Meeting, Manchester, September 2004 Full-size 2D6 Poster (375Kb)

	Dynamic Enzyme-Substrate Interactions in CYP102-BM3 - a Novel Method Dynamics of combined Docking, Molecular Dynamics, Essential Dynamics and Quantum-Mechanics K. Anton Feenstra, Jewgeni Starikow, Jan N.M. Commandeur and Nico P.E. Vermeulen 13th International Conference on Cytochromes P450, Prague 2003 (Cyp2003) Full-size BM3 Poster (566Kb)	Homology Modeling of Styrene Mono-Oxygenase - Structural and Dynamical Refinement using Automated Docking and Molecular Dynamics Simulations FIGON/Dutch Medicine Days, October 2002 K. Anton Feenstra, Jennifer McCormack-Venhorst, Jan N.M. Commandeur and Nico P.E. Vermeulen Full-size SMO Poster (428Kb)	Improving Efficiency of Large Time-scale Molecular Dynamics Simulations of Hydrogen-rich Systems K. Anton Feenstra and Herman J.C. Berendsen Molecular Graphics and Modelling Society: "Modelling Biomolecular Mechanism", 2000 York, UK IBM-SDSC Protein Folding Workshop, San Diego, March 30-31, 2001 Full-size "Efficiency" Poster (237Kb)

	Hierarchy of Protein Motion and Folding - Analysis of the Hierarchy of Motion of Globular Proteins with Implications for Protein Folding 13th International Biophysics Congress and IUPAB General Assembly at New Delhi, September,1999 K. Anton Feenstra, Ruud M. Scheek, Alan E. Mark and Herman J.C. Berendsen Full-size "Hierarchy" Poster (192Kb)



Poster Abstracts

	Nico P.E. Vermeulen, Peter Keizers, Marola M.H. van Lipzig, Chris de Graaf, Jennifer Venhorst, Anton E. Feenstra, Jan N.M. Commandeur In silico prediction and experimental validation of drug binding and metabolism: The case of Cytochromes P450 (2004) Eur. J. Pharm. Sci. 23, S9-S9.

	Nico P.E. Vermeulen, Chris de Graaf, Marola M.H. van Lipzig MMH, Anton F. Feenstra Automated docking and molecular dynamics simulations of substrate binding in cytochromes P450 (2004) Drug Metab. Rev. 36, 15-15 (29 Suppl. 1).

	Feenstra KA, vanderSpoel D Molecular modelling of binding N-terminal part of CCMV coat protein in solution with phosphate ions (1996) Progr. Biophys. & Molec. Biol. 65, PA333-PA333 (Suppl. 1)